Index

A

active_sites_by_pulse() (in module tapsap.moments_analysis.active_sites_by_pulse)

B

baseline_correct() (tapsap.structures.Transient.Transient method)

baseline_correction() (in module tapsap.preprocess.baseline_correction) baseline_gamma() (in module tapsap.preprocess.baseline_gamma)

C

calculate_residence_time() (in module tapsap.diffusion.calculate_residence_time) calibrate_all_species() (tapsap.structures.Experiment.Experiment method) calibrate_flux() (tapsap.structures.Transient.Transient method) calibration_coef() (in module tapsap.preprocess.calibration_coef)

calibration_teak() (in module tapsap.preprocess.calibration_teak) concentration_g() (in module tapsap.transient_analysis.concentration_g) concentration_units() (in module tapsap.transient_analysis.concentration_units) concentration_y() (in module tapsap.transient_analysis.concentration_y)

D

diffusion_moments() (in module tapsap.moments_analysis.diffusion_moments)

E

Experiment (class in tapsap.structures.Experiment)

experiment_to_df() (in module tapsap.file_io.experiment_to_df)

F

filter_xl() (in module tapsap.utils.filter_xl)

find_integration_time() (in module tapsap.utils.find_integration_time)

G

gamma_pdf() (in module tapsap.utils.gamma_pdf)

grahams_law() (in module tapsap.diffusion.grahams_law) (tapsap.structures.Transient.Transient method)

I

isfloat() (in module tapsap.utils.isfloat) isint() (in module tapsap.utils.isint)

isjson() (in module tapsap.utils.isjson) islist() (in module tapsap.utils.islist) isreversible() (in module tapsap.moments_analysis.isreversible)

M

mad() (in module tapsap.utils.mad) make_copy() (tapsap.structures.Experiment.Experiment method) min_mean_max() (in module tapsap.moments_analysis.min_mean_max) module tapsap tapsap.diffusion tapsap.diffusion.calculate_residence_time tapsap.diffusion.grahams_law tapsap.diffusion.opt_sdc tapsap.diffusion.standard_diffusion_curve tapsap.file_io tapsap.file_io.experiment_to_df tapsap.file_io.reactor_to_df tapsap.file_io.read_tdms tapsap.file_io.read_xlsx tapsap.file_io.transient_to_xlsx tapsap.file_io.transient_to_xlsx_summary tapsap.file_io.write_xlsx tapsap.moments_analysis tapsap.moments_analysis.active_sites_by_pulse tapsap.moments_analysis.diffusion_moments tapsap.moments_analysis.isreversible tapsap.moments_analysis.min_mean_max tapsap.moments_analysis.moments tapsap.moments_analysis.reactivities_product tapsap.moments_analysis.reactivities_reactant tapsap.moments_analysis.rtd_parameters tapsap.plot tapsap.plot.plot_tap tapsap.preprocess tapsap.preprocess.baseline_correction tapsap.preprocess.baseline_gamma tapsap.preprocess.calibration_coef tapsap.preprocess.calibration_teak tapsap.preprocess.smooth_flux_gam tapsap.preprocess.tap_mix tapsap.preprocess.tap_mix_opt tapsap.structures tapsap.structures.Experiment tapsap.structures.Reactor tapsap.structures.Transient tapsap.tapsolver tapsap.tapsolver.read_tapsolver_input tapsap.tapsolver.read_tapsolver_output tapsap.tapsolver.Simulation tapsap.tapsolver.write_tapsolver_input tapsap.tests tapsap.tests.test_diffusion tapsap.tests.test_file_io tapsap.tests.test_moments tapsap.tests.test_preprocess tapsap.tests.test_structures tapsap.tests.test_transient_analysis tapsap.tests.test_utils tapsap.transient_analysis tapsap.transient_analysis.concentration_g tapsap.transient_analysis.concentration_units tapsap.transient_analysis.concentration_y tapsap.transient_analysis.postprocess_g tapsap.transient_analysis.rate_g tapsap.transient_analysis.rate_units tapsap.transient_analysis.rate_y tapsap.transient_analysis.uptake tapsap.utils tapsap.utils.filter_xl tapsap.utils.find_integration_time tapsap.utils.gamma_pdf tapsap.utils.isfloat tapsap.utils.isint tapsap.utils.isjson tapsap.utils.islist tapsap.utils.mad tapsap.utils.rmse tapsap.utils.trapz

moments() (in module tapsap.moments_analysis.moments)

O

opt_sdc() (in module tapsap.diffusion.opt_sdc)

P

plot_tap() (in module tapsap.plot.plot_tap)

postprocess_g() (in module tapsap.transient_analysis.postprocess_g)

R

rate_g() (in module tapsap.transient_analysis.rate_g) rate_reactivity_data() (tapsap.structures.Experiment.Experiment method) rate_units() (in module tapsap.transient_analysis.rate_units) rate_y() (in module tapsap.transient_analysis.rate_y) reactivities_product() (in module tapsap.moments_analysis.reactivities_product) reactivities_reactant() (in module tapsap.moments_analysis.reactivities_reactant) Reactor (class in tapsap.structures.Reactor) reactor_to_df() (in module tapsap.file_io.reactor_to_df)

read_tapsolver_input() (in module tapsap.tapsolver.read_tapsolver_input) read_tapsolver_output() (in module tapsap.tapsolver.read_tapsolver_output) read_tdms() (in module tapsap.file_io.read_tdms) read_xlsx() (in module tapsap.file_io.read_xlsx) remove_delay_time() (tapsap.structures.Experiment.Experiment method) (tapsap.structures.Transient.Transient method) rmse() (in module tapsap.utils.rmse) rtd_parameters() (in module tapsap.moments_analysis.rtd_parameters)

S

set_accumulation() (tapsap.structures.Transient.Transient method) set_concentration() (tapsap.structures.Transient.Transient method) set_gas_diffusion() (tapsap.structures.Transient.Transient method) set_min_mean_max() (tapsap.structures.Transient.Transient method) set_moments() (tapsap.structures.Transient.Transient method) set_rate() (tapsap.structures.Transient.Transient method) set_reactivities() (tapsap.structures.Transient.Transient method) set_reactor_params() (tapsap.structures.Experiment.Experiment method) set_rtd_parameters() (tapsap.structures.Transient.Transient method) setUp() (tapsap.tests.test_diffusion.TestDiffusion method) (tapsap.tests.test_file_io.TestFileIO method) (tapsap.tests.test_moments.TestMoments method) (tapsap.tests.test_preprocess.TestPreprocess method) (tapsap.tests.test_structures.TestStructures method) (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) (tapsap.tests.test_utils.TestUtils method)

Simulation (class in tapsap.tapsolver.Simulation) smooth_flux() (tapsap.structures.Transient.Transient method) smooth_flux_gam() (in module tapsap.preprocess.smooth_flux_gam) standard_diffusion_curve() (in module tapsap.diffusion.standard_diffusion_curve)

T

tap_mix() (in module tapsap.preprocess.tap_mix) tap_mix_opt() (in module tapsap.preprocess.tap_mix_opt) tapsap module tapsap.diffusion module tapsap.diffusion.calculate_residence_time module tapsap.diffusion.grahams_law module tapsap.diffusion.opt_sdc module tapsap.diffusion.standard_diffusion_curve module tapsap.file_io module tapsap.file_io.experiment_to_df module tapsap.file_io.reactor_to_df module tapsap.file_io.read_tdms module tapsap.file_io.read_xlsx module tapsap.file_io.transient_to_xlsx module tapsap.file_io.transient_to_xlsx_summary module tapsap.file_io.write_xlsx module tapsap.moments_analysis module tapsap.moments_analysis.active_sites_by_pulse module tapsap.moments_analysis.diffusion_moments module tapsap.moments_analysis.isreversible module tapsap.moments_analysis.min_mean_max module tapsap.moments_analysis.moments module tapsap.moments_analysis.reactivities_product module tapsap.moments_analysis.reactivities_reactant module tapsap.moments_analysis.rtd_parameters module tapsap.plot module tapsap.plot.plot_tap module tapsap.preprocess module tapsap.preprocess.baseline_correction module tapsap.preprocess.baseline_gamma module tapsap.preprocess.calibration_coef module tapsap.preprocess.calibration_teak module tapsap.preprocess.smooth_flux_gam module tapsap.preprocess.tap_mix module tapsap.preprocess.tap_mix_opt module tapsap.structures module tapsap.structures.Experiment module tapsap.structures.Reactor module tapsap.structures.Transient module tapsap.tapsolver module tapsap.tapsolver.read_tapsolver_input module tapsap.tapsolver.read_tapsolver_output module tapsap.tapsolver.Simulation module tapsap.tapsolver.write_tapsolver_input module tapsap.tests module tapsap.tests.test_diffusion module tapsap.tests.test_file_io module tapsap.tests.test_moments module tapsap.tests.test_preprocess module tapsap.tests.test_structures module tapsap.tests.test_transient_analysis module tapsap.tests.test_utils module tapsap.transient_analysis module tapsap.transient_analysis.concentration_g module

tapsap.transient_analysis.concentration_units module tapsap.transient_analysis.concentration_y module tapsap.transient_analysis.postprocess_g module tapsap.transient_analysis.rate_g module tapsap.transient_analysis.rate_units module tapsap.transient_analysis.rate_y module tapsap.transient_analysis.uptake module tapsap.utils module tapsap.utils.filter_xl module tapsap.utils.find_integration_time module tapsap.utils.gamma_pdf module tapsap.utils.isfloat module tapsap.utils.isint module tapsap.utils.isjson module tapsap.utils.islist module tapsap.utils.mad module tapsap.utils.rmse module tapsap.utils.trapz module test_baseline_correct() (tapsap.tests.test_structures.TestStructures method) test_baseline_correct_amount() (tapsap.tests.test_structures.TestStructures method) test_baseline_correction_given_range() (tapsap.tests.test_preprocess.TestPreprocess method) test_baseline_correction_given_value() (tapsap.tests.test_preprocess.TestPreprocess method) test_baseline_correction_no_options() (tapsap.tests.test_preprocess.TestPreprocess method) test_baseline_gamma() (tapsap.tests.test_preprocess.TestPreprocess method) test_caclulate_moments_no_options() (tapsap.tests.test_moments.TestMoments method) test_caclulate_moments_with_integration_time() (tapsap.tests.test_moments.TestMoments method) test_calculate_residence_time() (tapsap.tests.test_diffusion.TestDiffusion method) test_calibrate_flux() (tapsap.tests.test_structures.TestStructures method) test_calibrate_flux_pulse() (tapsap.tests.test_structures.TestStructures method) test_calibration_coef() (tapsap.tests.test_preprocess.TestPreprocess method) test_calibration_teak() (tapsap.tests.test_preprocess.TestPreprocess method) test_concentration_g() (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) test_concentration_units() (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) test_concentration_y() (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) test_diffusion_moments() (tapsap.tests.test_moments.TestMoments method) test_diffusion_moments_new_mass() (tapsap.tests.test_moments.TestMoments method) test_experiment_to_df() (tapsap.tests.test_file_io.TestFileIO method) test_filter_xl() (tapsap.tests.test_utils.TestUtils method) test_find_integration_time() (tapsap.tests.test_utils.TestUtils method) test_gamma_pdf() (tapsap.tests.test_utils.TestUtils method) test_grahams_law_greater_than() (tapsap.tests.test_diffusion.TestDiffusion method) test_grahams_law_less_than() (tapsap.tests.test_diffusion.TestDiffusion method) test_isfloat_false() (tapsap.tests.test_utils.TestUtils method) test_isfloat_true() (tapsap.tests.test_utils.TestUtils method) test_isint_false() (tapsap.tests.test_utils.TestUtils method) test_isint_true() (tapsap.tests.test_utils.TestUtils method) test_isjson_true() (tapsap.tests.test_utils.TestUtils method) test_islist_false() (tapsap.tests.test_utils.TestUtils method) test_islist_true() (tapsap.tests.test_utils.TestUtils method) test_isreversible_false() (tapsap.tests.test_moments.TestMoments method) test_isreversible_true() (tapsap.tests.test_moments.TestMoments method) test_mad() (tapsap.tests.test_utils.TestUtils method) test_min_mean_max() (tapsap.tests.test_moments.TestMoments method) test_opt_sdc() (tapsap.tests.test_diffusion.TestDiffusion method) test_rate_g() (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) test_rate_y() (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) test_reactivities_product() (tapsap.tests.test_moments.TestMoments method) test_reactivities_reactant_irreversible() (tapsap.tests.test_moments.TestMoments method) test_reactivities_reactant_reversible() (tapsap.tests.test_moments.TestMoments method) test_reactor_to_df() (tapsap.tests.test_file_io.TestFileIO method) test_read_tdms() (tapsap.tests.test_file_io.TestFileIO method) test_rmse() (tapsap.tests.test_utils.TestUtils method) test_rtd_parameters() (tapsap.tests.test_moments.TestMoments method) test_set_moments() (tapsap.tests.test_structures.TestStructures method) test_set_rtd_parameters() (tapsap.tests.test_structures.TestStructures method) test_smooth_flux_gam() (tapsap.tests.test_preprocess.TestPreprocess method) test_standard_diffusion_curve() (tapsap.tests.test_diffusion.TestDiffusion method) test_tap_mix() (tapsap.tests.test_preprocess.TestPreprocess method) test_tap_mix_huber() (tapsap.tests.test_preprocess.TestPreprocess method) test_tap_mix_opt() (tapsap.tests.test_preprocess.TestPreprocess method) test_transient_set_min_mean_max() (tapsap.tests.test_structures.TestStructures method) test_transient_to_xlsx() (tapsap.tests.test_file_io.TestFileIO method) test_trapz_full_time() (tapsap.tests.test_utils.TestUtils method) test_trapz_full_time_first_moment() (tapsap.tests.test_utils.TestUtils method) test_trapz_full_time_second_moment() (tapsap.tests.test_utils.TestUtils method) test_uptake() (tapsap.tests.test_transient_analysis.TestTransientAnalysis method) TestDiffusion (class in tapsap.tests.test_diffusion) TestFileIO (class in tapsap.tests.test_file_io) TestMoments (class in tapsap.tests.test_moments) TestPreprocess (class in tapsap.tests.test_preprocess) TestStructures (class in tapsap.tests.test_structures) TestTransientAnalysis (class in tapsap.tests.test_transient_analysis) TestUtils (class in tapsap.tests.test_utils) to_reactor() (tapsap.tapsolver.Simulation.Simulation method) Transient (class in tapsap.structures.Transient) transient_to_xlsx() (in module tapsap.file_io.transient_to_xlsx) transient_to_xlsx_summary() (in module tapsap.file_io.transient_to_xlsx_summary) (tapsap.tests.test_file_io.TestFileIO method) trapz() (in module tapsap.utils.trapz)

U

uptake() (in module tapsap.transient_analysis.uptake)

W

write_tapsolver_input() (in module tapsap.tapsolver.write_tapsolver_input)

write_xlsx() (in module tapsap.file_io.write_xlsx)